PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003814m
Common NameCICLE_v10003814mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 346aa    MW: 39482.4 Da    PI: 8.8645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003814mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.32.8e-27381891128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                      lppG+rFhP++++l+++yL++k ++++      +  ++ ike+d+y++eP +Lp+       +++++++wy + + +  +  g  k r+ k+gy
  Ciclev10003814m  38 LPPGCRFHPSEDQLLCYYLTNKNKSTEeedtnlC-DNDLIKELDLYEHEPYELPEttcyayGYRGRKRHWYCYGRVSVVK--G-SKCRKGKNGY 127
                      79********************999886666532.3357**************954666543334566777777766554..3.56666789** PP

              NAM  83 Wkatgkdkevlsk.........kgel........vglkktLvfykg.rapkgektdWvmheyrl 128
                      W+  g+ +ev+++         +  +         g+++++vfy g + +++++t+W+mhey+l
  Ciclev10003814m 128 WRRRGRVTEVVVRntscnnynnN--NnnkrgklvLGTRTSFVFYLGnSLKTAVRTHWLMHEYAL 189
                      *********99986776666550..1556677779*********883557788*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3130205IPR003441NAC domain
PROSITE profilePS5100532.63238205IPR003441NAC domain
PfamPF023653.3E-1739189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
FSLGCCWFFR FSIPKRVKRR MGDTHRSDGN RKMESFSLPP GCRFHPSEDQ LLCYYLTNKN  60
KSTEEEDTNL CDNDLIKELD LYEHEPYELP ETTCYAYGYR GRKRHWYCYG RVSVVKGSKC  120
RKGKNGYWRR RGRVTEVVVR NTSCNNYNNN NNNKRGKLVL GTRTSFVFYL GNSLKTAVRT  180
HWLMHEYALD DHVKASFVLC RIFVKSRGGK SKSEVSLSSG AGESVSAVRH IGIQHDGFLI  240
PDSSEGKVDD DNSIDRRNDT CIYPVRLVSQ LDDHVTSRPA SDASFQFPAG IPSKEQSFGD  300
LEHTLEHILA ACVHLKVVGG GFTSQSTTVE RDKFTDPFLV RRSIDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-153520612169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11319PKRVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040257.10.0NAC domain-containing protein 96
TrEMBLV4T8Y70.0V4T8Y7_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006434730.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17192810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.12e-19NAC domain containing protein 20