PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10003702m | ||||||||
Common Name | CICLE_v10003702mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 315aa MW: 34669.1 Da PI: 8.2113 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.6 | 5.3e-32 | 80 | 137 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + v+YkeClkNhAa +Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e e Ciclev10003702m 80 KMVKYKECLKNHAAGMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEIEGE 137 6799*************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-26 | 82 | 137 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.7E-29 | 82 | 134 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-31 | 83 | 134 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.243 | 84 | 133 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-29 | 238 | 303 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-18 | 240 | 302 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.3E-27 | 241 | 297 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MELSSQDGEI PIPINSAYGG GGHGHMIHHD HHHHHHAPHD NIIPVASSAP QISPINGPPI 60 PISTNLEDQQ NGSTINVNKK MVKYKECLKN HAAGMGGNAT DGCGEFMPSG EEGTIEALTC 120 SACNCHRNFH RKEIEGEQQQ QAAINPFDYY HHHMNPHFNR VGRKVILGHH KNILAATPEA 180 LGYPTPTGTL ISSRPVGGGP TPHQMIMSYN MGSIPSESDE HEDGIGGGVV MAARPTAQLV 240 KKRFRTKFTQ EQKEKMFNFA EKVGWKIQKQ EESVVQQFCQ EIGVKRRVLK VWMHNNKHNL 300 AKKNNINPPS TTNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 242 | 299 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF592181 | 5e-57 | EF592181.1 Mangifera indica clone MiIIHR01 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431432.1 | 0.0 | zinc-finger homeodomain protein 4 | ||||
Swissprot | Q9M9S0 | 2e-80 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2H5QA39 | 0.0 | A0A2H5QA39_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SV99 | 0.0 | V4SV99_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431432.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 7e-72 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10003702m |
Entrez Gene | 18040451 |