PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10003450m | ||||||||
Common Name | CICLE_v10003450mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 40666.8 Da PI: 5.0252 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.3e-10 | 291 | 331 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Ciclev10003450m 291 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 331 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.37E-14 | 281 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.027 | 281 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-12 | 286 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-12 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.28E-12 | 290 | 335 | No hit | No description |
Pfam | PF00010 | 5.8E-8 | 291 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MDSFGVLFAD GEWESFNKMF PTEEFDFAQE FLAQAQQQQN DDEGLHFMTP SAFCPTSEAT 60 NVVSMTAGVD NESLFYYSNS TDRQLNSNLH NLSQDSNFGS NCSTSAFNNS SFFFSDISNN 120 HIPVTNAVCM SMVEEKIGLH DAPAFHDIAM EETSPINQCT TALVHAHDLQ LKRKLIDHGP 180 AEPDVNSSEN NGKKKPRVTR NVQKTTKKNA VKSKKQQNEK VRPKGNEGEE SNINGGSDGQ 240 SSTSTYSSDD DNASQETNNE DSKASSAALN LSGKQRASRG SATDPQSLYA RKRRERINER 300 LKILQNLVPN GTKVDISTML EEAVHYVKFL QVQIKLLSSD ELWMYAPLAY NGIDYLCLNQ 360 KISSLL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006433627.1 | 0.0 | transcription factor bHLH84 | ||||
TrEMBL | A0A067H1B8 | 0.0 | A0A067H1B8_CITSI; Uncharacterized protein | ||||
TrEMBL | V4T171 | 0.0 | V4T171_9ROSI; Uncharacterized protein | ||||
STRING | XP_006433627.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4132 | 22 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33880.1 | 6e-53 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10003450m |
Entrez Gene | 18042544 |