PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003157m
Common NameCICLE_v10003157mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YB
Protein Properties Length: 158aa    MW: 17562.8 Da    PI: 9.1677
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003157mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB161.99.1e-51398297
            NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                     +eqd++lPianv++imk++lP +akisk+ak+t+qec++efisfvt+easdkc++e+rkt+ngdd++wal+tlGf++y e++  yl+kyre+e+e+
  Ciclev10003157m  3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVRYLHKYREAERER 98
                     79*******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-502128IPR009072Histone-fold
SuperFamilySSF471135.97E-395116IPR009072Histone-fold
PfamPF008083.1E-26972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.0E-183654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-185573No hitNo description
PRINTSPR006153.0E-187492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MVEEQDKLLP IANVGKIMKQ ILPPRAKISK EAKQTMQECA TEFISFVTGE ASDKCHKENR  60
KTVNGDDICW ALSTLGFDNY TEAIVRYLHK YREAERERAK NQSKVTATSS NEEKAKESSS  120
HKTSKQTTSV QQIDETSSAP SELRALKKGK SSLTNPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-40293192Transcription factor HapC (Eurofung)
4g92_B4e-40293192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433383.11e-114nuclear transcription factor Y subunit B-4
RefseqXP_006472120.11e-114nuclear transcription factor Y subunit B-4
SwissprotO040273e-56NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLV4SG541e-112V4SG54_9ROSI; Uncharacterized protein
STRINGXP_006472120.11e-113(Citrus sinensis)
STRINGXP_006433383.11e-113(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-57nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]