PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003120m
Common NameCICLE_v10003120mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 336aa    MW: 37504.8 Da    PI: 9.548
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003120mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1383.6e-12267310548
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                      ++++r++kNRe+A rsR+RK+a++ +Le  v  L + N+ Lkk+
  Ciclev10003120m 267 RKQKRMIKNRESAARSRARKQAYTNQLESQVLWLRKRNSWLKKQ 310
                      689************************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-9263331IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.829265310IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-11267311No hitNo description
CDDcd147071.73E-21267312No hitNo description
PfamPF001701.1E-10267310IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-10267312No hitNo description
PROSITE patternPS000360270285IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVSPNGGQGP PYNNLIYDHE VRSQMGNIGK PSLMSNHMNL NHELAVIKNV QTVSGDNQDG  60
VQIVQNPSSS SSSSSPPPSY FLGNINLNGR LSKKTIDQVW KDTVHHEHEV DHSNQSAVVQ  120
QQLTPGETTL EDFLLRAGII NNSMGNNNNN NNNISNNNNH NGVAGNHHQP LISMGIDPMV  180
VVSQQADWLQ FQMASQQQQM GAMDTSYNVS ESVYENPVGD IGYSENQLAL SMPMPATSAA  240
PSELSKVNNV GRKRRYSDEI MEKTIERKQK RMIKNRESAA RSRARKQAYT NQLESQVLWL  300
RKRNSWLKKQ KEVDILFSSY PTPMSKYQLR RASSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434076.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLV4TCE90.0V4TCE9_9ROSI; Uncharacterized protein
STRINGXP_006434076.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17216911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.15e-28ABA-responsive element binding protein 3