PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002731m
Common NameCICLE_v10002731mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 164aa    MW: 18803.8 Da    PI: 6.392
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002731mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.84.7e-133290563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     ++ +r+q+NRe+ArrsR RK++ ++ L   v++L +eN +    ++  ++++ + +se+
  Ciclev10002731m 32 RKRKRMQSNRESARRSRMRKQKHLDDLIAQVDQLRKENNQILTSVNITTQHYMNIESEN 90
                     6789***********************************99999999999888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.8E-192892IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-103077No hitNo description
PROSITE profilePS5021710.7953093IPR004827Basic-leucine zipper domain
PfamPF001701.2E-103290IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.11E-123285No hitNo description
CDDcd147021.06E-203384No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MASSSGNSSG CSSRDGQNSA SEEDFQLAMD QRKRKRMQSN RESARRSRMR KQKHLDDLIA  60
QVDQLRKENN QILTSVNITT QHYMNIESEN SVLRAQLLEL TQRLDSLNDI LNFINTSSGI  120
LDTTDHHYHP HAHDDFINNN PMDTNTMFLN QPIMASPDIF QYY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13152RKRKRMQSNRESARRSRMRKQK
24451RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.201410.0abscission zone| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435056.11e-118bZIP transcription factor 11
SwissprotC0Z2L53e-48BZP44_ARATH; bZIP transcription factor 44
TrEMBLV4TF501e-117V4TF50_9ROSI; Uncharacterized protein
STRINGXP_006435056.11e-118(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.18e-48basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]