PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002538m
Common NameCICLE_v10002538mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 201aa    MW: 22776.5 Da    PI: 4.9172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002538mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.71.2e-36131311128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF Ptdeel+v++L++kv+  +++  +vi+++d+y ++Pw+L+ k+ ae ++wyf+s++         +nr+t +gyWk  g +++vl+
  Ciclev10002538m  13 LPPGFRFCPTDEELLVHFLQRKVALLPCHP-DVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRK--------TQNRMTGNGYWKPMGIEESVLT 97 
                      79*************************999.99**************977778899*****997........4589****************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++vglkk  +f+ g+a+ g+kt+W+m+eyrl
  Ciclev10002538m  98 RADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRL 131
                      ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-4610168IPR003441NAC domain
PROSITE profilePS5100544.44313169IPR003441NAC domain
PfamPF023651.3E-2114131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGDNINANAN VNLPPGFRFC PTDEELLVHF LQRKVALLPC HPDVIPDLDL YPYDPWQLNG  60
KALAEGNQWY FYSRKTQNRM TGNGYWKPMG IEESVLTRAD KKVGLKKYYI FHLGEASAGV  120
KTNWIMQEYR LSDSAAASSS NTSSSRSSKR RVNSKTDYSK WVICRVFERN CDDDDDGAEL  180
SCMDEVFLSL DDLDEISLPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-38917013166NO APICAL MERISTEM PROTEIN
1ut4_B6e-38917013166NO APICAL MERISTEM PROTEIN
1ut7_A6e-38917013166NO APICAL MERISTEM PROTEIN
1ut7_B6e-38917013166NO APICAL MERISTEM PROTEIN
3swm_A6e-38917016169NAC domain-containing protein 19
3swm_B6e-38917016169NAC domain-containing protein 19
3swm_C6e-38917016169NAC domain-containing protein 19
3swm_D6e-38917016169NAC domain-containing protein 19
3swp_A6e-38917016169NAC domain-containing protein 19
3swp_B6e-38917016169NAC domain-containing protein 19
3swp_C6e-38917016169NAC domain-containing protein 19
3swp_D6e-38917016169NAC domain-containing protein 19
4dul_A6e-38917013166NAC domain-containing protein 19
4dul_B6e-38917013166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432457.11e-150NAC domain-containing protein 104
SwissprotQ8GWK62e-84NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A067EYC81e-148A0A067EYC8_CITSI; Uncharacterized protein
TrEMBLA0A2H5PUU01e-148A0A2H5PUU0_CITUN; Uncharacterized protein
TrEMBLV4SY371e-148V4SY37_9ROSI; Uncharacterized protein
STRINGXP_006432457.11e-149(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-81xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]