PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002396m

Common Name

CICLE_v10002396mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 225aa MW: 25541.2 Da PI: 11.1541

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002396m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	164	194	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + L +++P + +K+s Le+A++YI+ L+ Ciclev10002396m 164 LRVLGRMIPGC-----RKVSSLNLLEEATDYISALE 194 55677788877.....8****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.489	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-7	152	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-6	161	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDSFDESNCD TSLDMEPKRK KRRIGNNDDG VGGEDELIRR RQRNDDDDDD DSRNAAYREV 60 TKRWRTDKEQ QIYSSKLFQA VRHVRRRSSS ARTGKAIRET ADRLMAVSAK GATRWSRAIL 120 SSPPSLRLKK RQVKVRVTGC SRLRRKPEEA MRRKNKLPPV QKKLRVLGRM IPGCRKVSSL 180 NLLEEATDYI SALEMQVRAM TALTAILAGS SPADDRLGLN VVRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	22	PKRKKRR
2	129	146	KRQVKVRVTGCSRLRRKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.5804	1e-93	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269\|PubMed:20023194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006433548.1	1e-161	transcription factor bHLH149
Swissprot	O80482	7e-39	BH149_ARATH; Transcription factor bHLH149
TrEMBL	V4SGJ6	1e-160	V4SGJ6_9ROSI; Uncharacterized protein
STRING	XP_006433548.1	1e-161	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7664	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	2e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10002396m
Entrez Gene	18041003

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]