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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10002294m | ||||||||
Common Name | CICLE_v10002294mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26693 Da PI: 7.3379 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.4e-18 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa +l+g Ciclev10002294m 41 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALICLKG 91 59*****998.**********9...336***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.47E-19 | 41 | 101 | No hit | No description |
SMART | SM00380 | 1.1E-35 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.654 | 42 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 42 | 100 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.3E-11 | 42 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-30 | 42 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVKTEQRIEQ EISSKKMPST SKSKSKSSSS PAAAAGCKKM KKYKGVRMRS WGSWVSEIRA 60 PNQKTRIWLG SYSTAEAAAR AYDAALICLK GSSANLNFPI TSSHYIPDTV MSPKSIQRVA 120 AAAANRFVND NIIDNNATTI DTTTPPISPP LPSSSYLSSS SSSSISSPSL SSSPPDQVDD 180 DVSLMHSLGS YSEPIPMMEQ LSWYNFDGIQ SPKYVDQMFS SFDQLLPTID DFLEDGDIRL 240 WSFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-15 | 39 | 100 | 2 | 64 | ATERF1 |
3gcc_A | 3e-15 | 39 | 100 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616776 | 6e-53 | JX616776.1 Gossypium hirsutum clone NBRI_GE61662 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434157.1 | 1e-178 | ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9SFE4 | 1e-46 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | V4T2N4 | 1e-177 | V4T2N4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434157.1 | 1e-178 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2999 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10002294m |
Entrez Gene | 18041804 |
Publications ? help Back to Top | |||
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