![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10002280m | ||||||||
Common Name | CICLE_v10002280mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27215.5 Da PI: 7.4335 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t eAa a++aa++kl+g Ciclev10002280m 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 89 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.03E-22 | 39 | 99 | No hit | No description |
SMART | SM00380 | 3.5E-37 | 40 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 40 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 40 | 97 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.629 | 40 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-14 | 40 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-10 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-10 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MSKALMGGIG EKKQLKKPAQ ASSRKGCMRG KGGPENALCT YKGVRQRTWG KWVAEIREPN 60 RGARLWLGTF DTSHEAAMAY DAAARKLYGP DAKLNLPELP SAQSHHLPAS SVNCTQHVAQ 120 RRNQPQMIHN SGITCSSNSP LPRSSNNDAT QVYNFNYNNS AMSFLDNGSV GSHGKLAENE 180 VKFSLNEQET DGFWENLNVN SPVFDESIWA EAAMSVDYPV MGEQGLLNAN FVDASCCGWD 240 MLPTPWCV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 41 | 97 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435084.1 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | V4V872 | 0.0 | V4V872_9ROSI; Uncharacterized protein | ||||
STRING | XP_006435084.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5399 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-50 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10002280m |
Entrez Gene | 18040416 |