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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10002239m | ||||||||
Common Name | CICLE_v10002239mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28053.9 Da PI: 8.651 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.1e-18 | 38 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r++ gR++k+c++rw + Ciclev10002239m 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 83 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.7e-16 | 92 | 134 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ Ciclev10002239m 92 PFSPAEDDTILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 134 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.429 | 33 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-31 | 35 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-17 | 37 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-18 | 38 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 39 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-15 | 40 | 82 | No hit | No description |
SMART | SM00717 | 3.6E-14 | 89 | 137 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.464 | 89 | 139 | IPR017930 | Myb domain |
CDD | cd00167 | 4.44E-11 | 92 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-22 | 92 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.0E-14 | 92 | 134 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEACSYSSTS SSESSSSESS LSGNNKTRRA THKPERIKGP WSAEEDRILT RLVERYGPRN 60 WSLISRYIKG RSGKSCRLRW CNQLSPSVAH RPFSPAEDDT ILAAHARFGN RWATIARLLP 120 GRTDNAVKNH WNSTLKRRTR EHPVQMQPHQ QQQLMDSVDN GGDNNNDNEN IGLGGFAVSG 180 SHHQQQQCMG LEDDALTALT LGPPGGSSSI NINDSSAERT ESLPAGFWDA MRGVIAREVR 240 DYMSSTLSGT SGFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-42 | 34 | 139 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-42 | 34 | 139 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434842.1 | 0.0 | transcription factor MYB77 | ||||
Refseq | XP_006473375.1 | 0.0 | transcription factor MYB77 | ||||
TrEMBL | A0A067H9B1 | 0.0 | A0A067H9B1_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NGY9 | 0.0 | A0A2H5NGY9_CITUN; Uncharacterized protein | ||||
TrEMBL | V4T4G7 | 0.0 | V4T4G7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006473375.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006434842.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14553 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-57 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10002239m |
Entrez Gene | 18041293 |