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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Ciclev10002182m |
| Common Name | CICLE_v10002182mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
HD-ZIP |
| Protein Properties |
Length: 265aa MW: 30286.7 Da PI: 5.1287 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10002182m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57 | 3.3e-18 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q+++Le+ Fe ++++ +++ +LA++lgL+ rq+ vWFqNrRa+ k
Ciclev10002182m 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110
56689***********************************************98 PP
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| 2 | HD-ZIP_I/II | 124.5 | 4.8e-40 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ +qvk+LE++Fe ++kLep+rKv+la+eLglqprq+avWFqnrRAR k+k+lE+dy Lk++ydal+ ++++L++e+e+L++el+e
Ciclev10002182m 56 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRE 148
69***************************************************************************************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MKRFSSSDSF DALITVYKSA DKTSTKRKQI YGREFQAMMD CLEEEDCREE ASQATEKKRR 60
LTVDQVKALE KNFEVDNKLE PDRKVKLAEE LGLQPRQIAV WFQNRRARLK SKELERDYGL 120
LKANYDALRL DHNNLQQENE ALTAELRELK AKLCQENEET SHAVEAEAPV SEQSKNHVSS 180
ENANAQLLTS PPSFSSLFTG SSSSSHPSMN WVQFSDSRTI LSNVYQQPQL VKVEEQSLLF 240
NPEDPCNIFS VDQAPTLQWY FTGH*
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