PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002172m
Common NameCICLE_v10002059mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 267aa    MW: 28915.2 Da    PI: 4.6055
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002172mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.41.8e-14208253348
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                      + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L ke
  Ciclev10002172m 208 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 253
                      679***************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-12204253No hitNo description
SMARTSM003385.7E-8206264IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.542208253IPR004827Basic-leucine zipper domain
PfamPF001706.8E-13208253IPR004827Basic-leucine zipper domain
CDDcd147071.01E-16210252No hitNo description
SuperFamilySSF579592.88E-9210253No hitNo description
PROSITE patternPS000360213228IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MASSKIMKSS NTRNSDLSKR SSTASSSSTK QQQEALTDAS KFASAMTVDG ILRNVYNTTT  60
ALTTDATLLD AQITLVDTNS NLIANENDQN GAVSAGAMKS VDDVWREIVS GEKKEMKEEA  120
IDEMMTLEDF LAKAGAVEDS AGGDDMDVKA FANVTERLSG GVYAFDQPAA ASPFQVEGAI  180
VGFGNGVEVV GGRGKRGRVM LEPLDKAAQQ RQRRMIKNRE SAARSRERKQ AYQVELESLA  240
VRLEEENEQL LKEKVIRYVT DAEESL*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434468.10.0G-box-binding factor 4
SwissprotP427772e-51GBF4_ARATH; G-box-binding factor 4
TrEMBLV4V6P60.0V4V6P6_9ROSI; Uncharacterized protein
STRINGXP_006434468.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.12e-41bZIP family protein