PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002156m

Common Name

CICLE_v10002156mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 271aa MW: 32192.9 Da PI: 6.357

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002156m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.4	3.9e-23	15	96	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W ++e+++Li +r e+e++l k++k+ We vs k+rerg++r+p qCk+kw+nl +ryk ++++ + s ++cp+f++l+ Ciclev10002156m 15 QWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDPD----SGRQCPFFNELH 96 7************************************************************9999997....4678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.6E-22	14	97	No hit	No description
CDD	cd12203	3.96E-18	15	79	No hit	No description
PROSITE profile	PS50090	7.073	16	72	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MMTSSSSSAH AQAVQWGNEE TRDLIVIRGE TERDLVGIKR NKTIWEIVSV KLRERGYSRT 60 PDQCKCKWKN LVNRYKGKET SDPDSGRQCP FFNELHAVFT ERAKNMQRLL AESEAGSMQA 120 KKRFKRLNAD ELSDEEDDDE EQSEEEEEEE ERPARGNSRK RKIERNVSDK SPRATSGTAG 180 IHEMLKAFFD QQQRMEVEWR QMMERRAQER QLFEEEWRQR MEKLERERLL VEQAWREKEE 240 QRRIREESRA ERRDALLTTL LTKLINQNNP *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432827.1	0.0	trihelix transcription factor GT-3b
Refseq	XP_006471559.1	0.0	trihelix transcription factor GT-3b
TrEMBL	A0A067E9D1	0.0	A0A067E9D1_CITSI; Uncharacterized protein
TrEMBL	V4SZ12	0.0	V4SZ12_9ROSI; Uncharacterized protein
STRING	XP_006471559.1	0.0	(Citrus sinensis)
STRING	XP_006432827.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17512	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	6e-36	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Ciclev10002156m
Entrez Gene	18042071