PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10002097m | ||||||||
Common Name | CICLE_v10002089mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 283aa MW: 31215.7 Da PI: 7.6931 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.5 | 8.5e-30 | 22 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQ YRl Ciclev10002097m 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ-YRL 75 79************************************************9.776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.937 | 19 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-29 | 19 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-13 | 22 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-21 | 22 | 74 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-19 | 121 | 166 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MERSAYVSYP YENGVMMTRD PKPRLRWTAD LHDRFVDAVT KLGGPDKATP KSVLRLMGLK 60 GLTLYHLKSH LQYRLGQQTR RQHGADQHKE NNGGSSFVNF YNGSLATSMT SSRGDEDQGP 120 ISEALKCQAE VQQRLQEQLE VQERLQMRIE AQGKYLQAIL QKAQKSLSVD SSVTGNVNAE 180 AARDQLTTFN LAISNLMESM NEQDRKGNAT EFNDMIKKGN ANGSSFRVQG DCGEREGNEG 240 DNKHKVDGGS THFDLNTKGS YDFNGIAANG IGLGPSTMLS YN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-16 | 22 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 22 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 22 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 22 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432630.1 | 0.0 | myb family transcription factor PHL11 isoform X2 | ||||
Refseq | XP_006471439.1 | 0.0 | myb family transcription factor PHL11 isoform X2 | ||||
Swissprot | C0SVS4 | 6e-82 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A067EUJ4 | 0.0 | A0A067EUJ4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4T3A2 | 0.0 | V4T3A2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006471438.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006432631.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 3e-70 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10002097m |
Entrez Gene | 18043024 |
Publications ? help Back to Top | |||
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