PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002095m
Common NameCICLE_v10002029mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 283aa    MW: 31092.3 Da    PI: 6.1061
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002095mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.11.8e-13201258460
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklk 60 
                       +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+e  +L ++e+e+ k+  ++l 
  Ciclev10002095m 201 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEEKARLlREEAEQNKQRFKQLM 258
                      689***********************************99853888998888887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.5E-13194259No hitNo description
SMARTSM003385.1E-11198262IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473200252IPR004827Basic-leucine zipper domain
PfamPF001703.3E-11200258IPR004827Basic-leucine zipper domain
CDDcd147071.51E-18202249No hitNo description
SuperFamilySSF579594.38E-10202252No hitNo description
PROSITE patternPS000360205220IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMASSKVMAT ASTTNTDLPC QQQPSSICPS SLSSMLADDP PNCLGSMNMD DLLKNIYATP  60
TPDQLALGSG ASIPRDVNDT GSANDNSGTN NNNNNNSSND DNNKSVDEVW KQIVAGGSDQ  120
RRAGAADEEM TLEDFLTKAG AVREEDVRPY GNNNNNNNNN INNINSNNNN QLVVVGPGGG  180
GGGGRGKRRI VEEPPMDKAT QQKQRRMIKN RESAARSRER KQAYTVELES LVTQLEEEKA  240
RLLREEAEQN KQRFKQLMEN LIPVVEKRRP PRVLRRVNSL HW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.41500.0fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432283.10.0G-box-binding factor 4 isoform X1
RefseqXP_006432285.10.0G-box-binding factor 4 isoform X2
TrEMBLA0A2H5PXD00.0A0A2H5PXD0_CITUN; Uncharacterized protein
TrEMBLV4T2A00.0V4T2A0_9ROSI; Uncharacterized protein
STRINGXP_006432284.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.13e-30bZIP family protein