PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002094m
Common NameCICLE_v10001401mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 283aa    MW: 31547.4 Da    PI: 8.0414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002094mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.92.6e-1223892128
              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++s++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Ciclev10002094m   2 IKSENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 38 
                      56678999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.947159IPR003441NAC domain
SuperFamilySSF1019413.01E-14259IPR003441NAC domain
PfamPF023651.4E-4938IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MIKSENSRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ HETERYQKAE ISLCRVHKRP  60
GVEDHTSLPR CLPTSKASSS RTGSSRSTTR PDKILYYHHR RHGIERLQGF GGQSSHQQME  120
MVTDEKMSTN TDQTDGSSSS CSDVAAVLGL SKQNVYRPNM ASITTSLLGL PSSIMEEQAA  180
ASTLVPSCTT TTLFPVALSS SSSSSLIYSD AADEFHGLLT YPQASMNHHQ QYYNIDHHLH  240
LQELQPQSLN LLATPLPAAF SDRLWEWNPI LEASREYNDP FK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431384.10.0NAC domain-containing protein 35
TrEMBLA0A067DMW50.0A0A067DMW5_CITSI; Uncharacterized protein
TrEMBLV4SV380.0V4SV38_9ROSI; Uncharacterized protein
STRINGXP_006431383.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.14e-39NAC domain containing protein 35