PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002089m

Common Name

CICLE_v10002089mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 284aa MW: 31343.9 Da PI: 8.2132

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002089m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.9e-33	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Ciclev10002089m 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.455	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-32	19	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-16	22	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	22	77	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-9	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-19	122	167	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MERSAYVSYP YENGVMMTRD PKPRLRWTAD LHDRFVDAVT KLGGPDKATP KSVLRLMGLK 60 GLTLYHLKSH LQKYRLGQQT RRQHGADQHK ENNGGSSFVN FYNGSLATSM TSSRGDEDQG 120 PISEALKCQA EVQQRLQEQL EVQERLQMRI EAQGKYLQAI LQKAQKSLSV DSSVTGNVNA 180 EAARDQLTTF NLAISNLMES MNEQDRKGNA TEFNDMIKKG NANGSSFRVQ GDCGEREGNE 240 GDNKHKVDGG STHFDLNTKG SYDFNGIAAN GIGLGPSTML SYN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	22	75	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	22	75	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	22	75	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	22	75	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432631.1	0.0	myb family transcription factor PHL11 isoform X1
Refseq	XP_006471438.1	0.0	myb family transcription factor PHL11 isoform X1
Swissprot	C0SVS4	3e-84	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A067EUR2	0.0	A0A067EUR2_CITSI; Uncharacterized protein
TrEMBL	V4T8I9	0.0	V4T8I9_9ROSI; Uncharacterized protein
STRING	XP_006471438.1	0.0	(Citrus sinensis)
STRING	XP_006432631.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-72	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10002089m
Entrez Gene	18043024

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]