PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002068m
Common NameCICLE_v10002068mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 289aa    MW: 33146.1 Da    PI: 9.1342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002068mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
  Ciclev10002068m 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding58.71.3e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Ciclev10002068m  67 RGNFTDEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.048961IPR017930Myb domain
SuperFamilySSF466892.32E-2913108IPR009057Homeodomain-like
SMARTSM007179.0E-141363IPR001005SANT/Myb domain
PfamPF002499.8E-161461IPR001005SANT/Myb domain
CDDcd001673.12E-101661No hitNo description
PROSITE profilePS5129429.03362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2865116IPR009057Homeodomain-like
SMARTSM007171.2E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1667111IPR001005SANT/Myb domain
CDDcd001674.23E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLNRG  120
LDPQTHRPLN QIHNHNNFNK YTINNNEGII QPKNLIKPKS ESSFDDDNNT STTNNNNCST  180
SGMTADEEPP QNVQLHQQEQ KQVHSSTHYQ ENLNLELSIG LAPSNSAHSR PLQQRKQPQQ  240
QKQVVDYDKS FEVKQAVCLC WQLGFGRSEL CKNCTQNSNG FRRYITGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434585.10.0transcription repressor MYB6
SwissprotQ388516e-97MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A067GYW00.0A0A067GYW0_CITSI; Uncharacterized protein
TrEMBLV4T8L10.0V4T8L1_9ROSI; Uncharacterized protein
STRINGXP_006434585.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-92myb domain protein 6