PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002059m
Common NameCICLE_v10002059mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 291aa    MW: 31941.9 Da    PI: 5.6808
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002059mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1461.1e-14208268362
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                      + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L k+++e+ k+ +++l  +
  Ciclev10002059m 208 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLlKEKAERTKERYKQLMEK 268
                      679**************************************97256788888888888665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.1E-12204266No hitNo description
SMARTSM003385.3E-10206270IPR004827Basic-leucine zipper domain
PfamPF001706.3E-13208267IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.841208260IPR004827Basic-leucine zipper domain
CDDcd147073.82E-16210256No hitNo description
SuperFamilySSF579591.44E-9210261No hitNo description
PROSITE patternPS000360213228IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MASSKIMKSS NTRNSDLSKR SSTASSSSTK QQQEALTDAS KFASAMTVDG ILRNVYNTTT  60
ALTTDATLLD AQITLVDTNS NLIANENDQN GAVSAGAMKS VDDVWREIVS GEKKEMKEEA  120
IDEMMTLEDF LAKAGAVEDS AGGDDMDVKA FANVTERLSG GVYAFDQPAA ASPFQVEGAI  180
VGFGNGVEVV GGRGKRGRVM LEPLDKAAQQ RQRRMIKNRE SAARSRERKQ AYQVELESLA  240
VRLEEENEQL LKEKAERTKE RYKQLMEKVV PVVEKKRPPR VLRRVQSAEW *
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434468.10.0G-box-binding factor 4
SwissprotP427775e-67GBF4_ARATH; G-box-binding factor 4
TrEMBLV4SJ330.0V4SJ33_9ROSI; Uncharacterized protein
STRINGXP_006434468.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.13e-44bZIP family protein