PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 291aa MW: 31137.2 Da PI: 4.9236

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002056m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.3	1.6e-16	201	236	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg Ciclev10002056m 201 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKG 236 ***99999*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	8.2E-12	65	100	IPR010399	Tify domain
PROSITE profile	PS51320	15.04	65	100	IPR010399	Tify domain
Pfam	PF06200	1.7E-13	68	99	IPR010399	Tify domain
Pfam	PF06203	4.3E-16	132	174	IPR010402	CCT domain
PROSITE profile	PS51017	12.531	132	174	IPR010402	CCT domain
PROSITE profile	PS50114	9.882	195	254	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.7E-15	195	248	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.85E-11	197	243	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.3E-15	199	241	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	5.05E-15	200	248	No hit	No description
PROSITE pattern	PS00344	0	201	228	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.6E-14	201	236	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MYGQSQSMNI SSQMSGGGAA ADEDDVSVAA DDHHLSYDPH SALENGIVVV EDVAHDSGYA 60 AGANELSNSS QLTLSFRGQV YVFDSVTPDK VQAVLLLLGG CELSSSPQGM EVIPHSQRGI 120 ADYPAKCTQP QRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMQRNKGQ FTSAKKSEGG 180 ALGWSNAQDP GQDDSPSETS CTHCGISSKS TPMMRRGPSG PRSLCNACGL FWANKGALRD 240 LGKKMEDQPL TPAEQGEGEV NDSDCGTAAH TDNELVSFSN DDDSALISEH *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006433799.1	0.0	GATA transcription factor 25 isoform X1
Swissprot	Q9LRH6	1e-85	GAT25_ARATH; GATA transcription factor 25
TrEMBL	V4T6G4	0.0	V4T6G4_9ROSI; Uncharacterized protein
STRING	XP_006433799.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5006	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	2e-77	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Ciclev10002056m
Entrez Gene	18041894

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]