PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10001998m

Common Name

CICLE_v10001998mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 300aa MW: 33673.9 Da PI: 4.9699

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10001998m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.5e-08	132	180	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn+ Er RR ++ + L llP + +++kK s +i +A eYI +L Ciclev10001998m 132 EHNAKERVRRMKLYATYGSLGALLPDS--ESKKKRSAPAIIDRALEYIPEL 180 6***********************6..47888************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.499	128	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-9	132	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-5	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.96E-5	133	185	No hit	No description
SuperFamily	SSF47459	1.2E-10	133	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDIPITEEYS MTSSNKIHDT SGSSDLGTFL EQESSGLEPS TDTELFLQNL VNYCNDDIFS 60 NSAEASGDPW VHGEASCSSL PLENHDSSRG LESSFLSERE TSAVAAPSIN KALPEKQLSA 120 KKKERNNTTI EEHNAKERVR RMKLYATYGS LGALLPDSES KKKRSAPAII DRALEYIPEL 180 ENEIEKLTLK KNNMLSKIEN KQHDNQNLQL EHEAPSVLVH EVEKGEVIIQ IICSPNDEKT 240 LFSKLLQNLE AKEKGIISVS TLCVWEKRVC YHLHIRMKKD SLATDYVEVL RQDVISWLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024951843.1	0.0	uncharacterized protein LOC112497552
TrEMBL	A0A2H5QJR3	0.0	A0A2H5QJR3_CITUN; Uncharacterized protein
TrEMBL	V4SWC4	0.0	V4SWC4_9ROSI; Uncharacterized protein
STRING	XP_006431857.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	5e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10001998m
Entrez Gene	18042029