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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10001824m |
| Common Name | CICLE_v10001824mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
SRS |
| Protein Properties |
Length: 328aa MW: 36339.8 Da PI: 7.1525 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10001824m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 227.6 | 2.3e-70 | 107 | 260 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssa 94
g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++++++ ++++ ++ ++++q++ + +++
Ciclev10001824m 107 GGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQLNQQDSQHhhHHHQQQQFRGENPKRQ 200
5789*****************************************************9999888754444433333114455555666666677 PP
DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++ le+s++P+e+ss+avfrcvrvs++dd +ee+aYqtav+igGhvfkGiLydqG+e+
Ciclev10001824m 201 RENQGLEVSQFPSELSSSAVFRCVRVSAIDDPDEEFAYQTAVHIGGHVFKGILYDQGPEN 260
788999****************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MAGWFYLGGR EEARSKQEEE EEKEENLYLY RSSANEEIYN STKGFELWPQ YYHQQQENMS 60
NYLSFGVGPS RRSSSNFINA AAASDESSRS GGFVMRQGVG GGGGGGGGGM NCQDCGNQAK 120
KDCPHMRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL AALQRHQQQQ EQQQLNQQDS 180
QHHHHHHQQQ QFRGENPKRQ RENQGLEVSQ FPSELSSSAV FRCVRVSAID DPDEEFAYQT 240
AVHIGGHVFK GILYDQGPEN RYTAAAESSH SQQLNLITAA TATTTTTTGT VAAGTSNPSA 300
NLIDPSLYPA PLNAFIAGTQ FFPPPRS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC160013 | 2e-35 | AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence. |
| GenBank | AC183777 | 2e-35 | AC183777.9 Medicago truncatula clone mth2-67d13, complete sequence. |
