PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 337aa MW: 35889.1 Da PI: 5.3838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10001768m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.9e-10	184	228	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L Ciclev10001768m 184 HSIAERLRRERIADRMRALQELVPSC-----NKTDRAAMLDEIVDYVKFL 228 99*********************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-15	177	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.387	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-15	181	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.29E-11	183	233	No hit	No description
Pfam	PF00010	1.6E-7	184	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-11	185	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MSTTGNGQES LGDDFFEQIL SVPTGYTDPS AAASNSADDI PMFLQLGSGG PSPGAGGGAT 60 SAADIRSLAM GISMGMMPLG LNLEHSFLRQ HEDHNSNHNN NNNTNASSSS PNNSSATSGI 120 NERDSVHMPS LFPAFGQLQS QSARPPLPRP PQVQQFQSQP AAAPQPPAVR PRVRARRGQA 180 TDPHSIAERL RRERIADRMR ALQELVPSCN KTDRAAMLDE IVDYVKFLRL QVKVLSMSRL 240 GAAGAVAQLV ADVPLSSALE GESIDGGSSQ PEWEKWSNDG TEQQVAKLME EDIGAAMQFL 300 QSKALCIMPI SLASAIYRTR QPDAPAFVKP ESSTPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	193	RLRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432927.1	0.0	transcription factor UNE12 isoform X1
Refseq	XP_006471682.1	0.0	transcription factor UNE12-like isoform X1
Swissprot	O22768	2e-88	UNE12_ARATH; Transcription factor UNE12
TrEMBL	V4SZB6	0.0	V4SZB6_9ROSI; Uncharacterized protein
STRING	XP_006471682.1	0.0	(Citrus sinensis)
STRING	XP_006432927.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	7e-65	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10001768m
Entrez Gene	18040396

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]