PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10001759m

Common Name

CICLE_v10001759mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 338aa MW: 37775.5 Da PI: 9.9739

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10001759m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.9	1.7e-15	47	128	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W++ v +L+ea++ ++ +r+klk+++Weev++++ ++ ++++qCk+k+e+++kry+ + +++ + s++ ++ + Ciclev10001759m 47 EWSEGAVSCLLEAYEAKWVLRNRAKLKGHDWEEVARYVsaraNNTKSPKTQTQCKNKIESMKKRYRSESANADG------SSWLLYPR 128 5***********************************87766777788999*************9988776......24666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.3E-19	45	130	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MEKENNINPL ENVNPSLLLA NNIKEESPRK QVGGGGGGSN DRLKRDEWSE GAVSCLLEAY 60 EAKWVLRNRA KLKGHDWEEV ARYVSARANN TKSPKTQTQC KNKIESMKKR YRSESANADG 120 SSWLLYPRLD LLLRGNNSQQ PQQQQQQQQQ QHSQPQPVSF HPPLLLIEPS PAVPQPPAPP 180 GAPPPPPPSQ PQNSHGSNGV DHIMAKEDGA GTKFSDHPSD KKVMDTDSST PALYSDKEKL 240 RSKKLKTKME RKRRGKGEDW EIAESIRWLA EVVVRSEQAR MDTMREIEKM RTEAEAKRGE 300 LDLKRTEIIA NTQLEIAKLF AAANAKGVDS SLRIGRN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432436.1	0.0	trihelix transcription factor ASIL1
TrEMBL	V4T819	0.0	V4T819_9ROSI; Uncharacterized protein
STRING	XP_006432436.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	8e-95	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Ciclev10001759m
Entrez Gene	18040780