PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001738m
Common NameCICLE_v100010812mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 341aa    MW: 37960.8 Da    PI: 9.6375
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001738mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.3e-104787545
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                     k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Ciclev10001738m 47 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 87
                     7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-743106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154589IPR004827Basic-leucine zipper domain
PfamPF001706.4E-74787IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.56E-74790No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-74892No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141448.3E-34129204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MADASPRTDI STDADTDEKN QRFDRGQSTA VVASDSSDRS KDKLDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQTHSMSGN GAMAFDVEYA  120
RWLEEQNKQI NELRSAVNSH ASDTELRMVV DGIMAHYDEI FRLKANAAKA DVFHLLSGMW  180
KTPAERCFMW LGGFRSSELL KLLVNQLEPL TEQQLVGIGN LQQSSQQAED ALSQGMEALQ  240
QSLAETLSSG SLGSSGSGNV ANYMGQMAMA MGKLGTLEGF IRQADNLRQQ TLQQMHRILT  300
TRQSARALLA IHDYFSRLRA PSSLGRAPPR EGRCIVFFAR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.116140.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432426.10.0transcription factor TGA6 isoform X3
RefseqXP_006432428.10.0transcription factor TGA6 isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLV4SDL10.0V4SDL1_9ROSI; Uncharacterized protein
TrEMBLV4T8130.0V4T813_9ROSI; Uncharacterized protein
STRINGXP_006432430.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-168TGACG motif-binding factor 6