PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001532m
Common NameCICLE_v10001533mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 374aa    MW: 40736.8 Da    PI: 4.3626
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001532mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.65.3e-16225261135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Ciclev10001532m 225 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 261
                      *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.3E-785120IPR010399Tify domain
PROSITE profilePS5132013.11785120IPR010399Tify domain
PfamPF062003.8E-1088119IPR010399Tify domain
PROSITE profilePS5101712.719153195IPR010402CCT domain
PfamPF062037.6E-15153194IPR010402CCT domain
SMARTSM004011.8E-10219272IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.59219276IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-11223271No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14223266IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.43E-16224271No hitNo description
PfamPF003207.4E-14225261IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFEEHARA PPIQIEDEDG DYEDGEGMDD IDEGNINSIN IINNNNNNNN  60
TNNNSNISNN SSMVNVAEHG VVVAAASRTS ELTLSFEGEV YVFPAVTPEK VQAVLLLLGG  120
RDIPTGVPTI EVPYDQSNRG VVDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYSVRKE  180
VAQRMHRKNG QFASLKESSG ASPWDSSQDG IQDGTPRPET VVRRCQHCGV SENNTPAMRR  240
GPAGPRTLCN ACGLMWANKG TLRDLSKGGR SLSMDQLEPE TPMDVKPSIM EGEFSGNQDE  300
LGTPEDPAKA VNQGSDNPSI DPDEEDMHGA AEDLTNSLPM GLVHSSADDD EQEPLVELAN  360
PSDTDIDIPS NFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147DTPKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.12310.0vegetative tissue
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433794.10.0GATA transcription factor 24 isoform X1
RefseqXP_024039692.10.0GATA transcription factor 24 isoform X1
RefseqXP_024039693.10.0GATA transcription factor 24 isoform X1
TrEMBLA0A067GNE40.0A0A067GNE4_CITSI; Uncharacterized protein
TrEMBLV4V5080.0V4V508_9ROSI; Uncharacterized protein
STRINGXP_006433794.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-73ZIM-like 1