PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001528m
Common NameCICLE_v10001528mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 375aa    MW: 41902.5 Da    PI: 7.5556
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001528mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.27.1e-082422881763
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      A+rsR RK+++i+eLe+ v++L+ae ++   ele l+++   l +e+
  Ciclev10001528m 242 AQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMEN 288
                      89***********************************9998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0021231290IPR004827Basic-leucine zipper domain
CDDcd147039.12E-17234281No hitNo description
SuperFamilySSF579597.16E-6242284No hitNo description
Gene3DG3DSA:1.20.5.1706.3E-8242284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MANSKGSSNI RNSLFTGKHA LLPPKSPFPS ISPAYSDYLP TGVIGPKAVQ KPREGSVHHQ  60
RTSSESFLME EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDLVNASN LDYAAQDEYR  120
YKHLVSVPSW GPQDIDYHKD TRHSPFYAEL NSLKLKNRAW DNPINALPHP GNLPSARENV  180
VLQNLGSPAQ DADGVPSTTS EKLETAEAGP HDSKSSSEKK DNSHVKASAS DTETKRAKQQ  240
FAQRSRVRKL QYIAELERNV QSLQAEGTEV SAELEFLNQQ NLILSMENKA LKQRLESLAQ  300
EQLIKCLEHE VLEREIGRLR VVYQQQQQQQ PPQKPSSSHR RTSSRDLDSQ FANLSLKHKD  360
ANSGHDPVTG PLHI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431745.10.0uncharacterized protein At4g06598
RefseqXP_006431746.10.0uncharacterized protein At4g06598
SwissprotQ8W3M76e-72Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLV4T0T20.0V4T0T2_9ROSI; Uncharacterized protein
STRINGXP_006431745.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-117bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]