PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001473m
Common NameCICLE_v10001389mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 387aa    MW: 43305.9 Da    PI: 4.923
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001473mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.16.4e-18121175128
              NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                      + F  tde+l    L++ ++g++l++ +vi++v+ y++ P++Lp      +  wy  +++++++         +++g W+a+g++ e++s ++ 
  Ciclev10001473m  12 VDFASTDENLFG-SLERMIRGSPLPC-NVINDVNPYNHMPSNLP------DGVWYLVCSKENTS---------AQHGQWRAKGETCEIFS-NSY 87 
                      67999*****95.5************.99**************9......45799999987654.........5689*************.999 PP

              NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                       +g ++tL f++g+ p+ +ktdWvm+e+r+
  Ciclev10001473m  88 IIGWRTTLEFFEGQVPNERKTDWVMQEFRI 117
                      ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-267140IPR003441NAC domain
PROSITE profilePS5100526.0788140IPR003441NAC domain
PfamPF023651.6E-911117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCPPTASTPI DVDFASTDEN LFGSLERMIR GSPLPCNVIN DVNPYNHMPS NLPDGVWYLV  60
CSKENTSAQH GQWRAKGETC EIFSNSYIIG WRTTLEFFEG QVPNERKTDW VMQEFRITQK  120
RLYGDKKEED SSSLCRVFLS GKQSPNHEMQ QKLFSANINN ETHSHSTELS FDKDKDDTRQ  180
VSIIRCEVSN DGESRTSAVM ERPTNHAEDN LPEADNFSED DFLELHDLDQ PLSPSSSSDN  240
SSGMTLSSDE YFDHLALLQE LEPCKNKGVG PENAEYKYSF STSHTPNEVV IFPGSLINVE  300
GSKPETGDIF KTESDSAMVN RTLDSRVLKQ AVQGQKANYR GESPSSNSHG QTSSFNGQIA  360
LQNGGKKAAV GRMKKLKRKY FCFMPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434933.10.0NAC transcription factor 29 isoform X2
TrEMBLV4T4U10.0V4T4U1_9ROSI; Uncharacterized protein
STRINGXP_006434934.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-16NAC 014