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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10001401m |
| Common Name | CICLE_v10001401mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
NAC |
| Protein Properties |
Length: 396aa MW: 45003.4 Da PI: 7.2798 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10001401m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 161.9 | 2.4e-50 | 26 | 151 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ ++s+
Ciclev10001401m 26 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAVGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIKSE 118
79***************************.89***************8777899**************************************** PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +glkktLvfy+g+apkg +t+W+m+eyrl
Ciclev10001401m 119 NSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 151
*******************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MSMSMSISMS NNNDSKDDDH EHDVVMPGFR FHPTEEELVE FYLRRKVEGK RFNVELITFL 60
DLYRYDPWEL PALAAVGEKE WFFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIKSENS 120
RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPQHETERYQ KAEISLCRVH KRPGVEDHTS 180
LPRCLPTSKA SSSRTGSSRS TTRPDKILYY HHRRHGIERL QGFGGQSSHQ QMEMVTDEKM 240
STNTDQTDGS SSSCSDVAAV LGLSKQNVYR PNMASITTSL LGLPSSIMEE QAAASTLVPS 300
CTTTTLFPVA LSSSSSSSLI YSDAADEFHG LLTYPQASMN HHQQYYNIDH HLHLQELQPQ 360
SLNLLATPLP AAFSDRLWEW NPILEASREY NDPFK*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-54 | 27 | 172 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-54 | 27 | 172 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-54 | 27 | 172 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-54 | 27 | 172 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-54 | 27 | 172 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-54 | 27 | 172 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
