PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001346m
Common NameCICLE_v10001346mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 408aa    MW: 46510.7 Da    PI: 7.318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001346mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.6e-50321572128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ ++s+
  Ciclev10001346m  32 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIKSE 124
                      79***************************.89***************8778899**************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Ciclev10001346m 125 NSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 157
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5631178IPR003441NAC domain
PROSITE profilePS5100555.91231178IPR003441NAC domain
PfamPF023654.5E-2533157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAIAAANMSN NNESNDNENN DNKDDHEHDV VMPGFRFHPT EEELVEFYLR RKVEGKRFNV  60
ELITFLDLYR YDPWELPALA AIGEKEWFFY VPRDRKYRNG DRPNRVTTSG YWKATGADRM  120
IKSENSRSIG LKKTLVFYSG KAPKGIRTSW IMNEYRLPQH ETERYQKAEI SLCRVYKRPG  180
VEDHPSLPRS LPTSRASSSR SVSSMSAQSD KRLDPHHHHQ FGIERFQALS GQSSQQQMDI  240
AAEKMSTNTD QTDRSSSCSD VTTVLGLSKQ NVYRPNMASV SSALGLPPSL MEEQAASLTL  300
VPNCTTTLFP VALSTSSSSA ASSNATDEFH RLLAYQQASM NHQQQYYNYQ HHHQQQQHHS  360
HFPQLPPQSQ PLSVNMLPSP LPAAFSDRLW EWNPIPEANR EYNDPFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-553317819165NO APICAL MERISTEM PROTEIN
1ut4_B2e-553317819165NO APICAL MERISTEM PROTEIN
1ut7_A2e-553317819165NO APICAL MERISTEM PROTEIN
1ut7_B2e-553317819165NO APICAL MERISTEM PROTEIN
3swm_A2e-553317822168NAC domain-containing protein 19
3swm_B2e-553317822168NAC domain-containing protein 19
3swm_C2e-553317822168NAC domain-containing protein 19
3swm_D2e-553317822168NAC domain-containing protein 19
3swp_A2e-553317822168NAC domain-containing protein 19
3swp_B2e-553317822168NAC domain-containing protein 19
3swp_C2e-553317822168NAC domain-containing protein 19
3swp_D2e-553317822168NAC domain-containing protein 19
4dul_A2e-553317819165NAC domain-containing protein 19
4dul_B2e-553317819165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431380.10.0NAC domain-containing protein 35
SwissprotQ9ZVP81e-123NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A2H5QU860.0A0A2H5QU86_CITUN; Uncharacterized protein
TrEMBLV4SZW90.0V4SZW9_9ROSI; Uncharacterized protein
STRINGXP_006431380.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-108NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]