PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001279m
Common NameCICLE_v10001159mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 423aa    MW: 45449.9 Da    PI: 9.7214
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001279mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.59.5e-16367418556
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                      +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ +e+ ++ 
  Ciclev10001279m 367 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQ 418
                      79*******************************************9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-12363422IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.611365416IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-11367416No hitNo description
CDDcd147072.47E-27367421No hitNo description
PfamPF001701.3E-13367418IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-14367416No hitNo description
PROSITE patternPS000360370385IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGSNINFKNF SNEPPNDVGK PPGNIPLTRQ SSVYSLTFEE FQNTVGGMGK DFGSMNMDEL  60
LKNIWSAEET QNMVASSSGN QPDCTNGLQR QGSLTLPRTL SQKTVDEVWK DISKEYSLKD  120
GIAGGSGVGG QGPNNMPQAQ RQQTLGEMTL EEFLVRAGVV REDLQFGGGV GGKVNGNSGL  180
FGDLSRSANN TGMGIGFQQM GKGASLMGNR NLETGNQINI QSSNLPLNVN GARMNQHPLA  240
RQQHNQQTQQ QPQQPQIFPK QPAMAYATQM PLQSSPGIKS GIVGVGDQAM NGNLIHGGAL  300
QGGGMGMVGL GAPPVGVSSG SPANQLSSDG IGKSNGDTSS VSPVPYMFNG SLRGRRFNGN  360
VEKVVERRQR RMIKNRESAA RSRARKQAYT MELEAEVAKL KEENEELRKK QDEMMEMQKN  420
QI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.212920.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434755.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2
SwissprotQ9M7Q41e-126AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLV4T9120.0V4T912_9ROSI; Uncharacterized protein
STRINGXP_006434756.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-101abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]