PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001210m
Common NameCICLE_v10001200mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 434aa    MW: 48166.4 Da    PI: 4.4125
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001210mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.83e-5161331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el+++yLk+kv g+k+ + e+i+evdiyk+ PwdLp k ++++++ +wyfF++r+kkya+g r nrat+ gyWk+tgkd++v
  Ciclev10001210m   6 LPPGFRFHPTDVELIKYYLKRKVMGRKFGF-EAIAEVDIYKHAPWDLPdKsSLRSGDLKWYFFCPREKKYANGARMNRATEFGYWKTTGKDRPV 98 
                      79*************************999.89**************96346677888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++e+vg+ ktLvf++g+ap+g +tdWvmheyr+
  Ciclev10001210m  99 QY-NNEVVGMIKTLVFHRGKAPRGDRTDWVMHEYRI 133
                      *9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-593156IPR003441NAC domain
PROSITE profilePS5100555.8586156IPR003441NAC domain
PfamPF023658.4E-277133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGKTSLPPGF RFHPTDVELI KYYLKRKVMG RKFGFEAIAE VDIYKHAPWD LPDKSSLRSG  60
DLKWYFFCPR EKKYANGARM NRATEFGYWK TTGKDRPVQY NNEVVGMIKT LVFHRGKAPR  120
GDRTDWVMHE YRIDEPGLSE RGVVQDAYVL CIVFQKDGPG PRNGAQYGAP FREEDWENDE  180
DVDCVDVISS AVLPPPVPSQ NSPVAESSHI PERLCIGTSE SCLSDTIPPT SNMLPPVPVI  240
NDVSREVAQD LSEDDILAML AYFTEDNNLI SNENGQIEYD NVHDGNIEAS PRLDGVDIYN  300
DLGDLENMVG FSGGEYDFFP AENSNYNLDG AILGDNAPFI ELLDLDAPLN CPAEAREPEQ  360
AHCNGPYTDQ KCYNSEQSCY NVNPCFSQSP SMLPQDSVRR NANEAPLNHG AAKLSVGSSR  420
ASEDSRSGGS HCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-48115712166NO APICAL MERISTEM PROTEIN
1ut4_B7e-48115712166NO APICAL MERISTEM PROTEIN
1ut7_A7e-48115712166NO APICAL MERISTEM PROTEIN
1ut7_B7e-48115712166NO APICAL MERISTEM PROTEIN
4dul_A7e-48115712166NAC domain-containing protein 19
4dul_B7e-48115712166NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024039820.10.0NAC domain-containing protein 82 isoform X2
SwissprotQ9FY821e-107NAC82_ARATH; NAC domain-containing protein 82
TrEMBLV4SD000.0V4SD00_9ROSI; Uncharacterized protein
STRINGXP_006464643.10.0(Citrus sinensis)
STRINGXP_006432239.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-109NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]