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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10001164m | ||||||||
Common Name | CICLE_v10001138mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 444aa MW: 47606 Da PI: 7.3451 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 210 | 259 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Ciclev10001164m 210 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 259 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.2E-33 | 210 | 268 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 210 | 268 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-37 | 210 | 273 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-14 | 210 | 259 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 210 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 211 | 222 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-14 | 218 | 269 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 233 | 249 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MCILNKVANQ RGSVEGSSFP TGSGGEAQDQ QDDQSYGQEN IIESQSGHFQ RATSNQITES 60 PSTAAASLMG YGHAREMSAM VSALTRVVSG QRAATDVGYS ATGFGLASAS ASVSASPASA 120 SGLWIGHKRG REEAEAAQLA GSLPRLYRGF GDFRDSSSSS SAEEPTSSIA APATTATTTT 180 TATIPTTPSS ESSSSGVSYE ETSGGERRRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF 240 DTAEAAARAY DEAALRFRGN RAKLNFPENV RIVPPLQPQP QPQPQPQQHQ QVLQNIPTRQ 300 TPNFATVATN FHQQQQQRQL QTATMPPFFM SQGYQDYFDY SQLLQNQPTS LLEQMLQPQT 360 QTHQIASMQP PLLSSSLSSY SFGPSSSSAS SVSSSSASFP LLFGDQQPGF FRPPQNQSQS 420 SGSDFPAPPP PWSHSGHYPP SSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 209 | 270 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 210 | ERRRRY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.10602 | 0.0 | root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434499.1 | 0.0 | ethylene-responsive transcription factor ABR1 isoform X2 | ||||
TrEMBL | V4V6R7 | 0.0 | V4V6R7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434497.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-13 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10001164m |
Entrez Gene | 18041603 |