PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001138m
Common NameCICLE_v10001138mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 449aa    MW: 48060.6 Da    PI: 7.8395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001138mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20215264255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Ciclev10001138m 215 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 264
                      7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-22215273IPR016177DNA-binding domain
SMARTSM003803.3E-37215278IPR001471AP2/ERF domain
PfamPF008474.0E-14215264IPR001471AP2/ERF domain
PROSITE profilePS5103225.712215272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-33215273IPR001471AP2/ERF domain
PRINTSPR003671.3E-11216227IPR001471AP2/ERF domain
CDDcd000181.13E-14223274No hitNo description
PRINTSPR003671.3E-11238254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MCILNKVANQ RGSVEGSSFP TGSGGEAQDQ QDDQSYGQEN IIESQSGHFQ RATSNQITES  60
PSTAAASLMG YGHAREMSAM VSALTRVVSG QRAATDVGYS ATGFGLASAS ASVSASPASA  120
SGLWIGHKRG REEAEAAQLA GSLPRLYRGF GDFRDSSSSS SAGAIITQEP TSSIAAPATT  180
ATTTTTATIP TTPSSESSSS GVSYEETSGG ERRRRYRGVR QRPWGKWAAE IRDPHKAARV  240
WLGTFDTAEA AARAYDEAAL RFRGNRAKLN FPENVRIVPP LQPQPQPQPQ PQQHQQVLQN  300
IPTRQTPNFA TVATNFHQQQ QQRQLQTATM PPFFMSQGYQ DYFDYSQLLQ NQPTSLLEQM  360
LQPQTQTHQI ASMQPPLLSS SLSSYSFGPS SSSASSVSSS SASFPLLFGD QQPGFFRPPQ  420
NQSQSSGSDF PAPPPPWSHS GHYPPSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22214275163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215ERRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.106020.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434497.10.0ethylene-responsive transcription factor ABR1 isoform X1
TrEMBLV4T3K20.0V4T3K2_9ROSI; Uncharacterized protein
STRINGXP_006434497.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-13ethylene response factor 110