PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001017m
Common NameCICLE_v10001017mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 477aa    MW: 50145.3 Da    PI: 9.7881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001017mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056587123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Ciclev10001017m 65 FVCEICNKGFQRDQNLQLHRRGH 87
                     89*******************88 PP
2zf-C2H217.21.4e-05141163123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ C+k +  +s+ k H++t+
  Ciclev10001017m 141 YKCERCSKKYAVQSDWKAHMKTC 163
                      9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-86487No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496587IPR007087Zinc finger, C2H2
SMARTSM003550.0176587IPR015880Zinc finger, C2H2-like
PfamPF121717.5E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035594106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-6129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.15E-8136162No hitNo description
PROSITE profilePS501578.517141169IPR007087Zinc finger, C2H2
SMARTSM0035543141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MTEIVNSSAM TVASATGEAS VSSPGSQIQV IPPTQKKRRN LPGMPDPDSE VIALSPKTLL  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNSKE VRKKVYVCPE STCVHHNPAR  120
ALGDLTGIKK HFSRKHGEKK YKCERCSKKY AVQSDWKAHM KTCGTREYKC DCGTIFSRRD  180
SFITHRAFCD ALAEESARTR TPAIEGNPNA KTVVSSPPPP PLTPSTGVVS PGLSIQSSEV  240
PADNPLIHSP PRPVATTPSA STSTSTVFAS VFSSSAISQP TQATGPSSFS NQISVSSTGI  300
EPTSLSLSPS LYLSSNNLFS KPEPSHIHYA PSPQPAMSAT ALLQKAAQIG ASSSSPSLLR  360
GLGLTMSSSS ADNQQENTNS ASAAAGLGLG LNSGFTDAMM DPSSLFGSKP TTLDLLGLGI  420
GADGASTTGL SALFTSFNGG FNVRPSAASY GGRRGSSPGD PWEGAPERKP NGAAFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34137198364Zinc finger protein JACKDAW
5b3h_F3e-34137198364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191103KLKQRNSKEVRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434957.10.0protein indeterminate-domain 2
SwissprotQ9LVQ71e-144IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLV4T4W20.0V4T4W2_9ROSI; Uncharacterized protein
STRINGXP_006434957.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-116C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]