PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000870m
Common NameCICLE_v10000612mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 521aa    MW: 59417 Da    PI: 4.2726
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000870mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.93.9e-53101362128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      ppGfrFhPtdeelv +yLk+k+ +kk+++ ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd++v+
  Ciclev10000870m  10 PPGFRFHPTDEELVLFYLKRKICKKKIKF-DIISETDVYKWDPEELPgQsLLKSGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRNVT 102
                      8****************************.99**************96347788999************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++++vg+kktLvfy+grap+ge+tdWvmhey+l
  Ciclev10000870m 103 C-HSRNVGVKKTLVFYRGRAPTGERTDWVMHEYTL 136
                      *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-585159IPR003441NAC domain
PROSITE profilePS5100554.7959159IPR003441NAC domain
PfamPF023656.5E-2810136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MKVTSENVWP PGFRFHPTDE ELVLFYLKRK ICKKKIKFDI ISETDVYKWD PEELPGQSLL  60
KSGDRQWFFF SPRDRKYPNG ARSNRATRHG YWKATGKDRN VTCHSRNVGV KKTLVFYRGR  120
APTGERTDWV MHEYTLDEEE LQRCQNISDY YALYKVFKKS GPGPKNGEQY GAPFKEEDWL  180
DDEDLVDTKT VEEIASKELK EVATAHDVKP NGQVPLVLDD FEEFIKQLAD EPLPTETQIN  240
YTYEAPQVVG EEEAQSTLMN ASSREVMFSE PISVCNEQAS FDFTQSASSN LQLYDTSEVT  300
SAPNNCKQVL QIFEEDFLEM DDLIGPQPTV STPEVENLQF NEFDGLSELD LFHDAALFLQ  360
NLEPVDLEEN TNALADNLVN QVDHQFQPQS VVNQVDNQLQ PNLIVNQMNH QLEPNSMGNQ  420
TSHQLQPNLA VSQVDYELQP HSLGAEDISS QQWMHDLCAE DISSQPWMHD QLTNFFTPTE  480
STQGILCPPI SACPYRALDE MDGLVDMTTV HMAKSLCKEN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-491016518171NO APICAL MERISTEM PROTEIN
1ut4_B6e-491016518171NO APICAL MERISTEM PROTEIN
1ut7_A6e-491016518171NO APICAL MERISTEM PROTEIN
1ut7_B6e-491016518171NO APICAL MERISTEM PROTEIN
4dul_A6e-491016518171NAC domain-containing protein 19
4dul_B6e-491016518171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434569.10.0NAC domain-containing protein 17
SwissprotQ9XIC51e-120NAC17_ARATH; NAC domain-containing protein 17
TrEMBLV4SJA90.0V4SJA9_9ROSI; Uncharacterized protein
STRINGXP_006434569.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-106NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]