PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

BES1

Protein Properties

Length: 539aa MW: 60461.6 Da PI: 5.791

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10000805m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	153.4	1.7e-47	65	205	2	133
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssas.a 88 g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr ++++++ ++++aa + ++ a Ciclev10000805m 65 GKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRlsnQSQSHHhlhQQMAAAAATTTaA 158 899****************************************************************7773333334464444443333334 PP DUF822 89 spesslq..sslkssalaspvesysaspksssfpspssldsislasa 133 p s++ +s+k++++++ ve + ++++ ++++sp+s+ds+ + + Ciclev10000805m 159 FPVRSVEspLSVKNCSVKASVECQPSVLRIDESLSPASFDSVVIPER 205 444444435789***************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.3E-47	65	209	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.45E-111	244	528	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	8.5E-127	247	533	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.1E-61	271	529	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.8E-32	284	298	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.8E-32	305	323	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.8E-32	327	348	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.8E-32	420	442	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.8E-32	493	512	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MNTIENIDEN PNQELLTQPP TQTQNQTQSH SRRPRGFAAT AAAAAAAAAA ANNNSNNNNN 60 NASSGKGKKE REKEKERTKL RERHRRAITS RMLAGLRQYG NFPLPARADM NDVLAALARE 120 AGWTVEPDGT TYRLSNQSQS HHHLHQQMAA AAATTTAAFP VRSVESPLSV KNCSVKASVE 180 CQPSVLRIDE SLSPASFDSV VIPERDSRGG EFNASTSPIN NSVECLEADQ LIQDVRAGEH 240 EDDFTGTPYI PVYVMLANHV INNFCQLVDP ELIRQEISHM KALNVDGVIV NCWWGIVEGW 300 NPQKYAWSGY RELFNIIREF NLKVQVVMAF HEYGANDSGD AWISLPQWVM EIGKGNQDIF 360 FTDREGRRNT ECLSWGVDKE RVLNGRTGIE VYFDFMRSFR TEFDDLFVAG LICAVEIGLG 420 PSGELKYPSL SERMGWRYPG IGEFQCYDRY LQQSLRKAAK LRGHSFWARG PDNAGQYNSL 480 PHETGFFCER GDYDSYYGRF FLNWYAQTLI DHADNVLSLA SLAFEETKII VKVCTELS*

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MNTIENIDEN PNQELLTQPP TQTQNQTQSH SRRPRGFAAT AAAAAAAAAA ANNNSNNNNN  60
NASSGKGKKE REKEKERTKL RERHRRAITS RMLAGLRQYG NFPLPARADM NDVLAALARE  120
AGWTVEPDGT TYRLSNQSQS HHHLHQQMAA AAATTTAAFP VRSVESPLSV KNCSVKASVE  180
CQPSVLRIDE SLSPASFDSV VIPERDSRGG EFNASTSPIN NSVECLEADQ LIQDVRAGEH  240
EDDFTGTPYI PVYVMLANHV INNFCQLVDP ELIRQEISHM KALNVDGVIV NCWWGIVEGW  300
NPQKYAWSGY RELFNIIREF NLKVQVVMAF HEYGANDSGD AWISLPQWVM EIGKGNQDIF  360
FTDREGRRNT ECLSWGVDKE RVLNGRTGIE VYFDFMRSFR TEFDDLFVAG LICAVEIGLG  420
PSGELKYPSL SERMGWRYPG IGEFQCYDRY LQQSLRKAAK LRGHSFWARG PDNAGQYNSL  480
PHETGFFCER GDYDSYYGRF FLNWYAQTLI DHADNVLSLA SLAFEETKII VKVCTELS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1q6g_A	1e-91	249	533	11	294	beta-amylase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.7457	0.0	abscission zone

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX139698	0.0	JX139698.1 Citrus trifoliata beta-amylase 7 (BAM7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432891.1	0.0	beta-amylase 8
Refseq	XP_006494107.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	V4V2T4	0.0	V4V2T4_9ROSI; Beta-amylase
STRING	XP_006494107.1	0.0	(Citrus sinensis)
STRING	XP_006432891.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Ciclev10000805m
Entrez Gene	18041039

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]