PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000756m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 552aa    MW: 60220 Da    PI: 4.9121
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000756mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-173885148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +l+d+vk++G g+W+++ +  g+ R++k+c++rw ++l
  Ciclev10000756m 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 85
                     79******************************************9986 PP
2Myb_DNA-binding52.71e-1691134146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE++ +v++++++G++ W++ a++++ gRt++++k++w++
  Ciclev10000756m  91 KGAFTQEEEQMIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 134
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8163385IPR017930Myb domain
SuperFamilySSF466894.87E-3037132IPR009057Homeodomain-like
SMARTSM007178.9E-153787IPR001005SANT/Myb domain
PfamPF002491.1E-143885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-233992IPR009057Homeodomain-like
CDDcd001671.90E-114085No hitNo description
PROSITE profilePS5129426.16986140IPR017930Myb domain
SMARTSM007177.8E-1790138IPR001005SANT/Myb domain
PfamPF002492.2E-1591134IPR001005SANT/Myb domain
CDDcd001673.70E-1293134No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2693139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSCSSNGSDD MMLSNDQTDS PLMDEGGGGT ARGVILKKGP WTSAEDAILI DYVKKHGEGN  60
WNAVQKNSGL FRCGKSCRLR WANHLRPNLK KGAFTQEEEQ MIVELHAKMG NKWARMAAHL  120
PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPE VSFQALQESQ CQNINGINSG DKGHHDLLQA  180
NGYEIPDVVF DSLKANQGVL PYVPDIPDIT ASTMLMKGLG SQYCSFVPPV MHRPKRLRES  240
VPLFSGYGGS VKNEFSFDQF HNDTSDKIAR SFGLSFPLDP DTTPKAPESF GMLQGSHTLS  300
NGNFSASKPN LGAVKLELPS LQYTETDLGS WGTSSPQPLL ETVDAFIQSP PPTGTLDSGC  360
PSPRNSGLLD ALIHESNILK NHSSDKSSNS SSVTPDVADS CTRNFCETEW EDYSDPLSPL  420
GHSATSLFNE CTPLSASGSS LDEQAPVETF GYKVKSEPVD QAWTPDREKE SSNLYVSQPD  480
ALLASDWFEH GSSYVKDPIV MNDAIATLLG DDLRSEYKQI STGTSAPSQG WGFSSCAWNN  540
MPAVCQMSEL P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31361395107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432323.20.0transcription factor MYB33
RefseqXP_006471261.10.0transcription factor MYB33
RefseqXP_015383648.10.0transcription factor MYB33
RefseqXP_024040037.10.0transcription factor MYB33
RefseqXP_024040038.10.0transcription factor MYB33
RefseqXP_024951612.10.0transcription factor MYB33
RefseqXP_024951613.10.0transcription factor MYB33
RefseqXP_024951614.10.0transcription factor MYB33
TrEMBLA0A2H5PPC70.0A0A2H5PPC7_CITUN; Uncharacterized protein
STRINGXP_006471261.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38022859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-143myb domain protein 33