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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10000454m | ||||||||
Common Name | CICLE_v10000454mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 703aa MW: 79793 Da PI: 8.2795 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.2 | 1e-13 | 203 | 265 | 2 | 69 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ +e laL+++r+++e+++ + We+vs++++e g++rs+++Ckek+e+ ++ + +i+ +++ Ciclev10000454m 203 WSLDELLALLRIRSSLENWFPEL-----TWEHVSRRLEELGYKRSAEKCKEKFEEESRNFSNINYNKN 265 ********************987.....9*******************************99987766 PP | |||||||
2 | trihelix | 91.6 | 8e-29 | 554 | 641 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev aLi++r ++ ++ ++++ ++ plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Ciclev10000454m 554 RWPRDEVFALINLRCNLYNNGEDKEgaaSRVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDANKKR-SIDSRTCPYFHQLS 641 8**************999999985333499*******************************************8.78889*******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 13 | 199 | 256 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.2E-8 | 201 | 264 | No hit | No description |
PROSITE profile | PS50090 | 6.156 | 203 | 254 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1 | 551 | 616 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.1E-18 | 553 | 641 | No hit | No description |
CDD | cd12203 | 2.24E-24 | 553 | 621 | No hit | No description |
PROSITE profile | PS50090 | 6.411 | 554 | 614 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MPTNNFKRCD VTLLSSNGKG RAPLGPPEID DQEAVQCLTV SPAEACENSS PSSLNKIGPI 60 LCIKRGKKEK KRGKLIKLVR KINTMFDEVP ADQLHQFIAA ASRASVVPFP LSFSTSSSSS 120 SLHLHHHHHH HHHGSSAFPA SFDPFSSTTT SQQVQQPHQL LHSLPQQKIN EEKEENRSSS 180 SSLVGMNLEV VQRERLIQKD PAWSLDELLA LLRIRSSLEN WFPELTWEHV SRRLEELGYK 240 RSAEKCKEKF EEESRNFSNI NYNKNYRTLF SEFDDDEEQE LYHRGQNSPH GHNVADEANK 300 KMDQQQPREE EEEEVEEEDK IMEQEAEHPR NDQTVANKSS CYHHQDKEKL SKGKKKRKFR 360 EKNFERFKGF CEDIVKKMMA QQEEMHNKLI EDLVKRDEEK VAREEAWKKQ QIDRFNKELE 420 IRASEQAITS NRQATIIKFL TRFSSSSSSS SSSTSEESGV NKHKVPNYSI PNPLPSSNSL 480 ILAQKPNQTQ NPRSNLAPTS VPKKQTSSTI AISPQNPSSA AAQNKPLALT STPIQISDSQ 540 KLITSDGKDD IGKRWPRDEV FALINLRCNL YNNGEDKEGA ASRVPLWERI SQGMSELGYK 600 RSAKRCKEKW ENINKYFRKT KDANKKRSID SRTCPYFHQL STLYNQGTLV APSDGTENRP 660 TALPENHHGS SQGGNSSTHS TMPVAQGDKN LVQISPALDF EF* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006471910.1 | 0.0 | trihelix transcription factor GTL2 | ||||
Refseq | XP_024038652.1 | 0.0 | trihelix transcription factor GTL2 | ||||
TrEMBL | V4T9I8 | 0.0 | V4T9I8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006432981.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8268 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 4e-74 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10000454m |
Entrez Gene | 18042232 |