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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g17100 | ||||||||
Common Name | GSCOC_T00038267001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24415.2 Da PI: 9.1068 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+k rqvtfskRr g++KKA+ELSvLCd++vav+ifs +gkly+++s Cc11_g17100 9 KKIEDKNSRQVTFSKRRSGLMKKAKELSVLCDVDVAVLIFSGRGKLYDFCS 59 68***********************************************96 PP | |||||||
2 | K-box | 47.3 | 9.1e-17 | 99 | 178 | 21 | 99 |
K-box 21 lakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++kL +++ +L +R l d++ L+l eL qLe+qLe++l + Rs+K++ll+e+i l + ek+l+eenk L++k++ Cc11_g17100 99 IRKLLEKNLMLSlFFNRDLEEPDVDHLNLSELVQLEEQLEDALIQTRSRKTRLLMESITSLSEVEKMLREENKLLQNKVA 178 67888888888874558999999******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.796 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-31 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.01E-38 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 8.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.478 | 92 | 183 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.0E-12 | 119 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010221 | Biological Process | negative regulation of vernalization response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGRRKVEIKK IEDKNSRQVT FSKRRSGLMK KAKELSVLCD VDVAVLIFSG RGKLYDFCST 60 NSLAKILQRY HNYAEAEDGP ARISGVEKRN PEGRNVVTIR KLLEKNLMLS LFFNRDLEEP 120 DVDHLNLSEL VQLEEQLEDA LIQTRSRKTR LLMESITSLS EVEKMLREEN KLLQNKVAAG 180 TPNEKRNDLI LEFGDLTHVG MISGQRQAML ELL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-21 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 6e-21 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 6e-21 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 6e-21 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_A | 5e-21 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_B | 5e-21 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_C | 5e-21 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
6bz1_D | 5e-21 | 1 | 79 | 1 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU265826 | 1e-166 | GU265826.1 Coffea arabica MADS-box protein FLC subfamily (C11) mRNA, complete cds. | |||
GenBank | HQ845334 | 1e-166 | HQ845334.1 Coffea arabica FLOWERING LOCUS C (FLC) mRNA, complete cds. | |||
GenBank | KJ483243 | 1e-166 | KJ483243.1 Coffea arabica FLC (FLC) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027097746.1 | 1e-143 | agamous-like MADS-box protein AGL27 | ||||
TrEMBL | A0A068UYN5 | 1e-152 | A0A068UYN5_COFCA; Uncharacterized protein | ||||
STRING | XP_009625850.1 | 2e-66 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 1e-36 | AGAMOUS-like 31 |