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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc11_g16990 |
Common Name | GSCOC_T00038253001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
SBP |
Protein Properties |
Length: 449aa MW: 49373.3 Da PI: 9.2175 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc11_g16990 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 129.4 | 1.3e-40 | 173 | 250 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+CqvegC+ dls+ak+yhr+hkvC+ hsk+p+v+v+gle+rfCqqCsrfh+l+efDe+krsCrrrL++hn+rrrk+++
Cc11_g16990 173 RCQVEGCNLDLSSAKDYHRKHKVCDNHSKCPKVVVAGLERRFCQQCSRFHSLTEFDEKKRSCRRRLSDHNARRRKPRQ 250
6**************************************************************************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0048653 | Biological Process | anther development |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 449 aa
Download sequence Send
to blast |
MEWNTKSDWD NFISFNSKTS DSLKKLQLTD LVIDDEGEID GGSFDLSGIG GTSGGSGSDL 60 GHGSSGKSSK SVSRDSSPKE GMKTSGLKLQ GSPGAIITEI VPPRADLSRT PSSLETSVVS 120 VEPLIGLKLG KRTYFENSAG SSTKSPGFSV APVSSISTAK KTKSSCQNAT IPRCQVEGCN 180 LDLSSAKDYH RKHKVCDNHS KCPKVVVAGL ERRFCQQCSR FHSLTEFDEK KRSCRRRLSD 240 HNARRRKPRQ ETIQFNRMKL TSSYHDGRKQ MNFSLNNGES IGNPTWENVC SSKFTLTQHF 300 PLKREKVGQP PLPRIELPYA MTMHNKLSNE LLTSKASAAD VFKQGFKESV SSSESAAPEF 360 PRALSLLSTN SWGSSEPEPI SFDHPLRVYP TTMPLSVIPQ ALPSEYWQIE TQSSSHTFTG 420 SSNIGGHFQE IQLFKPPYQN DIFSNTWS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 229 | 246 | KKRSCRRRLSDHNARRRK |