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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc11_g16470 |
Common Name | GSCOC_T00038187001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
Trihelix |
Protein Properties |
Length: 403aa MW: 45606.5 Da PI: 5.2645 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc11_g16470 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 81.4 | 1.2e-25 | 86 | 167 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W ++e++aLi +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk+k++ ++ s +++y++++e
Cc11_g16470 86 WVQEETRALISLRREIDSLFNTSKSNKHLWDQISLKMREKGFDRSPTMCTDKWRNLLKEFKKVKQNGDRN---GSAKMSYYKEIE 167
****************************************************************999874...566899***997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MYVSEQPPRA IDFYKEEDNP EAATGDMIIE VSTANNHLPP PQHRQVLGVG GGGDTTSSGG 60 EDNTNTTHPL SSSSDLKAPK KRAETWVQEE TRALISLRRE IDSLFNTSKS NKHLWDQISL 120 KMREKGFDRS PTMCTDKWRN LLKEFKKVKQ NGDRNGSAKM SYYKEIEEIL RERSKNSSSY 180 KSPPPTSSNK VDSFMQFSDK GIDDTSITFE TVEGDGRQPL NLERRLDHDG HPLAITATEA 240 VAASEVSPWN WRENPGNGHQ NASYEGRVIS VKWGDYTKRI GIDGTPDGIK EAIKATFRLR 300 TKRAFWLEDD NNIVRTLDRD MPLGNYTLHV DEGSLTIKFC LYEEADDLPV HTEDKTFYSE 360 DDFRDFLSRR GWTCLREYDG YRNIDSLDDL CPGAAYRGVN LG*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |