PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g14670 | ||||||||
Common Name | GSCOC_T00032026001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 19391.6 Da PI: 9.9175 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.9e-06 | 15 | 91 | 8 | 50 |
HHHHHHHHHHHHHHHHHCTSCC.C...................................TTS-.STCHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.as................................kapskK.lsKaeiLekAveY 50 Er RR+++++ +++L +ll + as k +++ s a+ + +Av+ Cc11_g14670 15 TERHRRQQMKNLYSKLASLLLPpASevnlplpalldyslthvknlkeriqeleakkeKFKGQIgSSTADFVLQAVKI 91 6*******************995657777777777777777777777776666666555555555556666666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.286 | 7 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-7 | 9 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-7 | 15 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MQAGNLKPRI PRGVTERHRR QQMKNLYSKL ASLLLPPASE VNLPLPALLD YSLTHVKNLK 60 ERIQELEAKK EKFKGQIGSS TADFVLQAVK IIEKGPILEV NLETGLHKRF ILPEVISILE 120 EGGAQVLSAS YATLTDRVLY TISSEASSPR IGIETSRLHE RLKALAGTGC FFCSL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095620.1 | 1e-124 | transcription factor bHLH168-like | ||||
TrEMBL | A0A068TVW9 | 1e-123 | A0A068TVW9_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13045 | 3 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10585.1 | 9e-25 | bHLH family protein |