PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g13920
Common NameGSCOC_T00032124001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 339aa    MW: 36546 Da    PI: 9.5904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g13920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-13101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
      Cc11_g13920 101 PWTEDEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 145
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.78694150IPR017930Myb domain
SuperFamilySSF466891.5E-1696150IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-1797148IPR006447Myb domain, plants
SMARTSM007176.8E-1098148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-10100145IPR009057Homeodomain-like
CDDcd001677.61E-9101146No hitNo description
PfamPF002492.0E-10101145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASSCSLQCG NDGQNCCQTC PEVSGAGPAA AAAADGCNKG FMLFGVRVME GSFRKSASMN  60
NLAQFEQPQD SMNNNDVNAG YASDDVVHPS ARNRERKRGV PWTEDEHRLF LLGLQKVGKG  120
DWRGISRNFV KTRTPTQVAS HAQKYFLRRN NHSRRRRRSS LFDITTDTVL GSAMEDRAQE  180
ESVPQPAMQQ QKNLINNLEK FPMSTYPTNI APVMLPVNPV KGASSLESLT LGPANNQLLL  240
NRTNNTSSPT PKLIRPIPLA PIPPSSKMAD LNLNKTTIPD PLPLSLKLST PSSSAASQPS  300
SEQHSPSSSS PPARHTSPFQ AMPSSFDNSS GDSIISVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096890.10.0transcription factor MYB1R1
TrEMBLA0A068TW550.0A0A068TW55_COFCA; Uncharacterized protein
STRINGVIT_01s0026g01050.t011e-113(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114232225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.22e-65MYB_related family protein