PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 324aa MW: 36521.2 Da PI: 4.6569

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc11_g13540	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.7e-19	87	140	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe +++++ e++ +LAk l+L+ rqV +WFqNrRa++k Cc11_g13540 87 KKRRLTAEQVQFLERSFELENKLDPERKVQLAKDLSLQPRQVAIWFQNRRARYK 140 56789************************************************9 PP
2	HD-ZIP_I/II	127.7	4.9e-41	86	178	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv++LE+sFe e+kL+perKv+la++L lqprqva+WFqnrRAR+ktkqlEk+y+ Lk++yd+l+++ ++L ke+e+L++e+++ Cc11_g13540 86 EKKRRLTAEQVQFLERSFELENKLDPERKVQLAKDLSLQPRQVAIWFQNRRARYKTKQLEKEYDCLKSSYDKLRADYDTLFKENESLKNEVHS 178 69**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.41E-19	70	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.459	82	142	IPR001356	Homeobox domain
SMART	SM00389	2.3E-18	85	146	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	87	140	IPR001356	Homeobox domain
CDD	cd00086	4.43E-17	87	143	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.1E-19	88	149	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	117	140	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.6E-16	142	183	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MEGCGGNITG TSSVLLQNER LPCSSHEALD SLWISNSSPP PFHGSTSMVK FGDARGENTR 60 EKTFFAQSDK GYDGSESYDN CFHQPEKKRR LTAEQVQFLE RSFELENKLD PERKVQLAKD 120 LSLQPRQVAI WFQNRRARYK TKQLEKEYDC LKSSYDKLRA DYDTLFKENE SLKNEVHSLA 180 EKLVQRERGK AKSEPLDSST ISPLNAEPQK ANPIALSPNV PEMPVSVKQE DASSAKSDVF 240 DSDSSHCTDG NHSSLMVPDD SSHVFEPELS DFSQDEDDSL SRSLLQPTGF PPKLEYECYN 300 DLQCNSGNLG FSVEDQSTWF WAY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARYKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097765.1	0.0	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A068TVH7	0.0	A0A068TVH7_COFCA; Uncharacterized protein
STRING	XP_009766848.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-45	homeobox 1