PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g13330 | ||||||||
Common Name | GSCOC_T00032194001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 498aa MW: 55523.1 Da PI: 5.9095 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.6e-14 | 39 | 83 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + ++ +G+++W+ Ia+++ +t qc+ rw++yl Cc11_g13330 39 SWSQEEDDILREQIRIHGTENWAIIASKFK-DKTTRQCRRRWFTYL 83 6****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 44.8 | 2.8e-14 | 89 | 132 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd+ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + Cc11_g13330 89 KGGWSPEEDLLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 132 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.567 | 32 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-13 | 36 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.16E-25 | 37 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.26E-13 | 39 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-20 | 40 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.0E-13 | 40 | 99 | No hit | No description |
PROSITE profile | PS51294 | 20.771 | 84 | 138 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-14 | 88 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 91 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.52E-11 | 92 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MQTVKRRPSS NTGATDDAIA TSQQQQQQQP KQKERHIVSW SQEEDDILRE QIRIHGTENW 60 AIIASKFKDK TTRQCRRRWF TYLNSDFKKG GWSPEEDLLL CEAQKIFGNR WTEIAKVVSG 120 RTDNAVKNRF STLCKKRAKR EALAKENNTS YINLNNKRVI FPSGLSTNGI SEAAGPLKKM 180 RRAHMPDPTE SCNREEELVG ECATSSQLLR PPFAVLAQNI HKSGSNLSTQ QHGNDVKEAP 240 TDAGNNKIQG TFLKKDDPKV LALMQQAELL SSLAAKVNVD STDQSLENAW KVLQDFLNQN 300 KESDEFCFRI SDMDVQLDIL KDLVEDLQGS FEGNQASWRQ PDLYEESSGS SEYSTGSTLP 360 SHLPLDKVEQ CQSELCAPYQ DVRPVSQSTH AGDQHQLVKV ENTMLGSEPT DKDVMPDCDE 420 LKADGVLACG FSTTEFGSPL QETPLFRTIA ATIPSPKFSE SERHFLLRAL GMESTSLTPS 480 TNPSQPPACK RALLQSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 40 | 137 | 10 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to DNA in promoters cis-regulatory element 5'-GGCGCGC-3' of cell cycle genes, including cyclins, cyclin-dependent kinases (CDKs), and components of the pre-replication complex (PubMed:20675570, PubMed:24687979). Binds to DNA in promoters cis-regulatory element 5'-AGCCG-3' of auxin regulated genes (e.g. PIN3 and PIN7) (PubMed:26578169). Together with FAMA and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Represses the expression of the mitosis-inducing factors CDKB1-1 and CDKA-1, specifically required for the last guard mother cells (GMC) symmetric divisions in the stomatal pathway (PubMed:20675570, PubMed:24687979). Represses CYCA2-3 in newly formed guard cells (PubMed:21772250). Together with MYB88, regulates stomata spacing by restricting divisions late in the stomatal cell lineage thus limiting the number of GMC divisions (PubMed:16155180). In collaboration with CDKB1-1 and CDKB1-2, restrict the G1/S transition and chloroplast and nuclear number during stomatal formation, and normally maintain fate and developmental progression throughout the stomatal cell lineage (PubMed:24123248). Involved in sensing and/or transducing abiotic stress (e.g. drought and salt), probably via the positive regulation of NAC019 (PubMed:21105921). Regulates female reproduction being required for entry into megasporogenesis, probably via the regulation of cell cycle genes (PubMed:22915737). Plays a minor role in lateral roots (LRs) initiation (PubMed:26578065). Involved complementarily in establishing the gravitropic set-point angles of lateral roots by regulating the transcription of PIN3 and PIN7 in gravity-sensing cells of primary and lateral roots (PubMed:26578169). {ECO:0000269|PubMed:16155180, ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:21105921, ECO:0000269|PubMed:21772250, ECO:0000269|PubMed:22915737, ECO:0000269|PubMed:24123248, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24687979, ECO:0000269|PubMed:26578065, ECO:0000269|PubMed:26578169}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00259 | DAP | Transfer from AT2G02820 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096559.1 | 0.0 | transcription factor MYB124 | ||||
Refseq | XP_027096560.1 | 0.0 | transcription factor MYB124 | ||||
Swissprot | F4IRB4 | 1e-167 | MYB88_ARATH; Transcription factor MYB88 | ||||
TrEMBL | A0A068TVN3 | 0.0 | A0A068TVN3_COFCA; Uncharacterized protein | ||||
STRING | VIT_01s0026g01910.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4124 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02820.2 | 1e-158 | myb domain protein 88 |