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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc11_g12850 |
Common Name | GSCOC_T00032257001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
MYB |
Protein Properties |
Length: 452aa MW: 49444.1 Da PI: 8.0703 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc11_g12850 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 154 | 199 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++
Cc11_g12850 154 RGHWRPAEDTKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 199
899*****************************.***********996 PP
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2 | Myb_DNA-binding | 56.5 | 6.6e-18 | 206 | 250 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ +
Cc11_g12850 206 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 250
678*******************.*********.***********976 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MANKQCSIYA PNTTSSINTG IDSYPSGASP FLCSSSLALS SPLSSSPPPS GSMGMIFEDM 60 SCLSISPNYL SSSRDSLHEG RPCWGFSFMP KCLLEESQNS DVGEGKGSSD CSDGFGETGN 120 QPIDLNADLS EEKQSNNLQA VGSRDSGQSK LCARGHWRPA EDTKLRELVA LYGPQNWNLI 180 AEKLEGRSGK SCRLRWFNQL DPRINRRAFT EEEEERLMAA HRLYGNKWAM IARLFPGRTD 240 NAVKNHWHVV MARKYREQSS AYRRRKMGQF VCGRVEDHDR SFVSRRDASA HIKTESTGPP 300 PPNYTLINNS NGTLLGNLTA CSSGGNLNGG VGAGGIGIAC GSNISPHMAS GGEAVLSNIV 360 PSRHTGFCSS QQTSSLFFSA GNCSNGMMSI FKQGRPWDRP RDESNVSYLC HHPVQQQIHH 420 PLLMTAMQQS QHCQSININT TTSFITTHYY H*
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