PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g12480 | ||||||||
Common Name | GSCOC_T00032312001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | WRKY | ||||||||
Protein Properties | Length: 527aa MW: 56985.9 Da PI: 7.9608 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.1 | 8.8e-34 | 234 | 290 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ d++v+ei+Y+g+Hnh+ Cc11_g12480 234 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSH-DGQVTEIIYKGQHNHQ 290 8****************************************.***************8 PP | |||||||
2 | WRKY | 107 | 9.6e-34 | 413 | 471 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+ Cc11_g12480 413 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 471 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-30 | 229 | 292 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-26 | 231 | 292 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-37 | 233 | 291 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.352 | 234 | 292 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-26 | 234 | 290 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-37 | 398 | 473 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-30 | 405 | 473 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.192 | 408 | 473 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-40 | 413 | 472 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-26 | 414 | 471 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MAENDGSSSR APTRPTIILP PRTAMESLFT GGPGASPGPM TLVSSFFSDN DPDSECRSFS 60 QLLAGAMGSP VAVTALRQNF QQPGNSSSRE KVSSSGAGDA DFRFKQSRPT GLVVTQPAMF 120 TVPPGLSPAS LLDSPGFFSS GQGAFGLSHQ QVLAQVTAQA AQGEAHMQTP AEYPSLSSAP 180 APPSSQLQSL TSSTTTPQQM LPPVPDPNII KASSDVPQPD ERLQPSITVD KPADDGYNWR 240 KYGQKQVKGS EYPRSYYKCT HPSCPVKKKV ERSHDGQVTE IIYKGQHNHQ PPQHMKRAKD 300 SGNPNGTFNL QGNSELGSMG RSENLNMNRE GFPSHSLALK DQESSQATPE QVSGSSDSEE 360 VGNAENGVGT RDNDEPESKR RNIEVQTSEP ASSHRTVTEP RIIVQTTSEV DLLDDGYRWR 420 KYGQKVVKGN PYPRSYYKCT SQGCNVRKHV ERAASDPKAV ITTYEGKHNH DVPATKSSSH 480 STASMASELK PPTTLVNNQS LTRRAEFKNN GQQPIASLRF KEEQIT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-42 | 234 | 474 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-42 | 234 | 474 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096695.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-180 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A068TVV4 | 0.0 | A0A068TVV4_COFCA; Uncharacterized protein | ||||
STRING | XP_009619961.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4107 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-157 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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