PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g11510
Common NameGSCOC_T00032435001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 335aa    MW: 36994.8 Da    PI: 6.1151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g11510genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.15e-164695255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 r +h+  E+rRR++iN++f+ Lrel+P++    ++K + a+ L +++eY+++Lq
  Cc11_g11510 46 RSKHSVTEQRRRSKINERFQILRELIPHS----DQKRDTASFLLEVIEYVQYLQ 95
                 889*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1842117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-2243117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.194494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-144699No hitNo description
SMARTSM003537.3E-1250100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MKSGKGHQEE EEEEEEDFGA KKDSTPSQNN PKGADGKSSD KANAMRSKHS VTEQRRRSKI  60
NERFQILREL IPHSDQKRDT ASFLLEVIEY VQYLQEKVQK CEGSYQAWNS EPTKLMPWRN  120
SHWRTQSFVS HPQTMKNGSG SGPLYPGRLE DNNITVSSTV QPSQQNPIES DLGREVTSKT  180
MDQQTELTNQ AMPMPMPLQA AMPVPIQNDG AFSHSQPRPA PDAQSSDCPI TDDMLNHPEG  240
LTIEGGTISI SSIYSQGLLN TLTQALQTAG VDLSQATVSV QINLGKQANR GLASGISVTK  300
DHERRSPSGD QLAGQYRDTS NGEDFSQAQK RLKR*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097977.10.0transcription factor BIM2 isoform X1
RefseqXP_027097978.10.0transcription factor BIM2 isoform X1
SwissprotQ9CAA41e-108BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A068TYQ00.0A0A068TYQ0_COFCA; Uncharacterized protein
STRINGSolyc05g011810.2.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-80BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]